Publications

2023

55. Viscoelastic active diffusion governed by nonequilibrium fractional Langevin equations: Underdamped dynamics and ergodicity breaking

Sungmin Joo, Jae-Hyung Jeon, Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena 177 (2023) 114288 

54. Statistical modeling of mRNP transport in dendrites: A comparative analysis of β-actin and Arc mRNP dynamics

Hyerim Ahn, Xavier Durang, Jae Youn Shim, Gaeun Park, Jae-Hyung Jeon, Hye Yoon Park, Traffic. 2023; 1-11.

53. Nonequilibrium diffusion of active particles bound to a semiflexible polymer network: Simulations and fractional Langevin equation

Hyeong-Tark Han,Sungmin Joo, Takahiro Sakaue, Jae-Hyung Jeon, J. Chem. Phys. 159, 024901 (2023) 

52. A machine learning approach to discover migration modes and transition dynamics of heterogeneous dendritic cells

Taegeun Song, Yongjun Choi, Jae-Hyung Jeon and Yooon-Kyoung Cho, Front. Immunol. 14:1129600 (2023) 

51. Accessing power-law statistics under experimental constraints

Xavier Durang, Hyerim Ahn, Jae Youn Shim, Hye Yoon Park, and Jae-Hyung Jeon, Phys. Rev. Research 5, 013011 (2023) 

2022

50. Active diffusion of self-propelled particles in flexible polymer networks

Yeongjin Kim, Sungmin Joo, Won Kyu Kim, Jae-Hyung Jeon, Macromolecules 2022 55(16), 7136-7147

49. Formation of cellular close-ended tunneling nanotubes through mechanical deformation

M. Chang, O. Lee, ..., J.-H. Jeon, and J.-B. Lee, Sci. Adv. 8, eabj3995 (2022)

48. Bayesian inference of scaled versus fractional Brownian motion

S Thapa, S Park, Y Kim, JH Jeon, R Metzler, MA Lomholt, 2022 J. Phys. A: Math. Theor. 55 194003

47. Fractal and Knot-Free Chromosomes Facilitate Nucleoplasmic Transport

Yeonghoon Kim, Ludvig Lizana, and Jae-Hyung Jeon, Phys. Rev. Lett. 128, 038101 (2022)

2021

46. Stochastic chromatin packing of 3D mitotic chromosomes revealed by coherent X-rays

D Sung, C Lim, M Takagi, C Jung, H Lee, DH Cho, JY Shin, K Ahn, J Hwang, D Nam, Y Kohmura, T Ishikawa, N Imamoto, JH Jeon, C Song, PNAS 2021 Vol. 118 No. 46 e2109921118

45. Bayesian inference of Levy walks via hidden Markov models

S Park, S Thapa, Y Kim, MA Lomholt, JH Jeon, 2021 J. Phys. A: Math. Theor. 54 484001

44. Objective comparison of methods to decode anomalous diffusion

G Muñoz-Gil, G Volpe, MA Garcia-March, E Aghion, A Argun, CB Hong, T Bland, S Bo, JA Conejero, N Firbas, A Gentili, Z Huang, JH Jeon, H Kabbech, Y Kim, P Kowalek, D Krapf, H Loch-Olszewska, MA Lomholt, JB Masson, PG Meyer, S Park, B Requena, I Smal, T Song, J Szwabiński, S Thapa, H Verdier, G Volpe, A Widera, M Lewenstein, R Metzler, C Manzo, Nat Commun 12, 6253 (2021)

43. A mini-review of the diffusion dynamics of DNA-binding proteins: experiments and models

S Park, O Lee, X Durang, JH Jeon, J. Korean Phys. Soc. 78, 408–426 (2021)

2020

42. Anomalous diffusion of active Brownian particles cross-linked to a networked polymer: Langevin dynamics simulation and theory

S Joo, X Durang, O Lee, JH Jeon, Soft Matter, 2020, 16, 9188--9201 

2019

41. Langevin dynamics driven by a telegraphic active noise

J Um, T Song, JH Jeon, Front. Phys. 7:143 (2019)

40. Mapping the spectrum of 3D communities in human chromosome conformation capture data

SH Lee, Y Kim, S Lee, X Durang, P Stenberg, JH Jeon, L Lizana, Sci Rep 9, 6859 (2019)

39. First-passage statistics under stochastic resetting in bounded domains

X Durang, S Lee, L Lizana, JH Jeon, 2019 J. Phys. A: Math. Theor. 52 224001

38. Immature dendritic cells navigate microscopic mazes to find tumor cells

E Um, JM Oh, J Park, T Song, TE Kim, Y Choi, C Shin, D Kolygina, JH Jeon, BA Grzybowski, YK Cho, Lab Chip, 2019, 19, 1665–1675

37. Correction: Immature dendritic cells navigate microscopic mazes to find tumor cells

E Um, JM Oh, J Park, T Song, TE Kim, Y Choi, C Shin, D Kolygina, JH Jeon, BA Grzybowski, YK Cho, Lab Chip, 2019, 19, 3140-3140

2018

36. Asymmetric polar localization dynamics of the serine chemoreceptor protein Tsr in Escherichia coli

D Oh, Y Yu, H Lee, JH Jeon, BL Wanner, K Ritchie, PLoS ONE 13(5): e0195887 (2018)

35. Neuronal messenger ribonucleoprotein transport follows an aging Lévy walk,

MS Song, HC Moon, JH Jeon, HY Park, Nat Commun 9, 344 (2018)

34. Fluctuations of random walks in critical random environments

Y Mardoukhi, JH Jeon, AV Chechkin, R Metzler, Phys. Chem. Chem. Phys., 2018, 20, 20427--20438

2016

33. Non-Brownian diffusion in lipid membranes: Experiments and simulations

R Metzler, JH Jeon, AG Cherstvy, Biochimica et Biophysica Acta 1858 (2016) 2451–2467

32. Protein crowding in lipid bilayers gives rise to non-Gaussian anomalous lateral diffusion of phospholipids and proteins

JH Jeon, M Javanainen, H Martinez-Seara, R Metzler, I Vattulainen, Phys. Rev. X 6, 021006 (2016)

2015

31. Geometry controlled anomalous diffusion in random fractal geometries

Y Mardoukhi, JH Jeon, R Metzler, Phys. Chem. Chem. Phys., 2015, 17, 30134-30147

30. Superdiffusion dominates intracellular particle motion in the supercrowded cytoplasm of pathogenic Acanthamoeba castellanii

JF Reverey, JH Jeon, H Bao, M Leippe, R Metzler, C Selhuber-Unkel, Sci Rep 5, 11690 (2015)

29. Geometry controlled anomalous diffusion in random fractal geometries: looking beyond the infinite cluster

Y Mardoukhi, JH Jeon, R Metzler, Phys. Chem. Chem. Phys., 2015, 17, 30134-30147

2014

28. Anomalous diffusion models and their properties: non-stationarity, non-ergodicity, and ageing at the centenary of single particle tracking

R Metzler, JH Jeon, AG Cherstvy, E Barkai, Phys. Chem. Chem. Phys., 2014, 16, 24128-24164

27. Scaled Brownian motion: a paradoxical process with a time dependent diffusivity for the description of anomalous diffusion

JH Jeon, AV Chechkin, R Metzler, Phys. Chem. Chem. Phys., 2014, 16, 15811-15817

26. An effective mesoscopic model of double-stranded DNA

JH Jeon, W Sung, J Biol Phys 40, 1–14 (2014)

25. First passage behavior of multi-dimensional fractional Brownian motion and application to reaction phenomena

JH Jeon, AV Chechkin, R Metzler, First-Passage Phenomena and Their Applications, pp. 175-202 (2014)

2013

24. Noisy continuous time random walks

JH Jeon, E Barkai, R Metzler, : J. Chem. Phys. 139, 121916 (2013)

23. Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes

M Javanainen, H Hammaren, L Monticelli, JH Jeon, MS Miettinen, Faraday Discuss., 2013, 161, 397–417

22. Anomalous diffusion and power-law relaxation of the time averaged mean squared displacement in worm-like micellar solutions

JH Jeon, N Leijnse, LB Oddershede, R Metzler, 2013 New J. Phys. 15 045011

2012

21. Anomalous diffusion of phospholipids and cholesterols in a lipid bilayer and its origins

JH Jeon, HMS Monne, M Javanainen, R Metzler, Phys. Rev. Lett. 109, 188103 (2012)

20. The role of ergodicity in anomalous stochastic processes: analysis of single-particle trajectories

R Metzler, JH Jeon, 2012 Phys. Scr. 86 058510

19. Inequivalence of time and ensemble averages in ergodic systems: exponential versus power-law relaxation in confinement

JH Jeon, R Metzler, Phys. Rev. E 85, 021147 (2012)

18. Diffusion inside living human cells

N Leijnse, JH Jeon, S Loft, R Metzler, LB Oddershede, Biophysical Journal 102(3)

17. Quantifying supercoiling-induced denaturation bubbles in DNA

J Adamcik, JH Jeon, KJ Karczewski, R Metzler, G Dietler, Soft Matter, 2012, 8, 8651-8658

16. Anomalous diffusion and fractional transport equations

R Metzler, JH Jeon, Fractional Dynamics, pp. 3-32 (2011)

2011

15. First passage behaviour of fractional Brownian motion in two-dimensional wedge domains

JH Jeon, AV Chechkin, R Metzler, 2011 EPL 94 20008

14. In vivo anomalous diffusion and weak ergodicity breaking of lipid granules

JH Jeon, V Tejedor, S Burov, E Barkai, C Selhuber-Unkel, Phys. Rev. Lett. 106, 048103 (2011)

13. Single particle tracking in systems showing anomalous diffusion: the role of weak ergodicity breaking

S Burov, JH Jeon, R Metzler, E Barkai, Phys. Chem. Chem. Phys., 2011, 13, 1800-1812

2010

12. Supercoiling induces denaturation bubbles in circular DNA

JH Jeon, J Adamcik, G Dietler, R Metzler, Phys. Rev. Lett. 105, 208101

11. Analysis of short subdiffusive time series: scatter of the time-averaged mean-squared displacement

JH Jeon, R Metzler, 2010 J. Phys. A: Math. Theor. 43 252001

10. How double-stranded DNA breathing enhances its flexibility and instability on short length scales

O Lee, JH Jeon, W Sung, Phys. Rev. E 81, 021906 (2010)

9. Fractional Brownian motion and motion governed by the fractional Langevin equation in confined geometries

JH Jeon, R Metzler, Phys. Rev. E 81, 021103 (2010)

8. Fractional Brownian motion and generalized Langevin equation motion in confined geometries

JH Jeon, R Metzler, arXiv:1001.0681

2009

7. ANALYSIS OF SINGLE PARTICLE TRAJECTORIES: FROM NORMAL TO ANOMALOUS DIFFUSION

R Metzler, V Tejedor, JH Jeon, Y He, WH Deng, S Burov, E Barkai, Acta Physica Polonica Series B 40(87):1315 

2008

6. How topological constraints facilitate growth and stability of bubbles in DNA

JH Jeon, W Sung, Biophysical Journal 95(8) 3600–3605

5. A breathing wormlike chain model on DNA denaturation and bubble: Effects of stacking interactions

JY Kim, JH Jeon, W Sung, The Journal of chemical physics

4. The effect of sequence correlation on bubble statistics in double-stranded DNA

JH Jeon, PJ Park, W Sung, J. Chem. Phys. 128, 055101 (2008)

2006

3. A semiflexible chain model of local denaturation in double-stranded DNA

JH Jeon, W Sung, FH Ree, J. Chem. Phys. 124, 164905 (2006) 

2005

2. The effect of sequence correlation on bubble conformation in double-stranded DNA.

JH Jeon, PJ Park, W Sung, 2005APS..MARA21006J 

2004

1. Conformation of local denaturation in double-stranded DNA

W Sung, JH Jeon, Phys. Rev. E 69, 031902 (2004)